CreateWorkflowRequest
¶
Source code in docs_src/capo_omics/types/create_workflow_request.py
accelerators
instance-attribute
¶
accelerators: NotRequired[Accelerators]
The computational accelerator specified to run the workflow.
container_registry_map
instance-attribute
¶
container_registry_map: NotRequired[ContainerRegistryMap]
(Optional) Use a container registry map to specify mappings between the ECR private repository and one or more upstream registries. For more information, see Container images in the Amazon Web Services HealthOmics User Guide.
container_registry_map_uri
instance-attribute
¶
container_registry_map_uri: NotRequired[Uri]
(Optional) URI of the S3 location for the registry mapping file.
definition_repository
instance-attribute
¶
definition_repository: NotRequired[DefinitionRepository]
The repository information for the workflow definition. This allows you to source your workflow definition directly from a code repository.
definition_uri
instance-attribute
¶
definition_uri: NotRequired[WorkflowDefinition]
The S3 URI of a definition for the workflow. The S3 bucket must be in the same region as the workflow.
definition_zip
instance-attribute
¶
definition_zip: NotRequired[bytes]
A ZIP archive containing the main workflow definition file and dependencies that it imports for the workflow. You can use a file with a ://fileb prefix instead of the Base64 string. For more information, see Workflow definition requirements in the Amazon Web Services HealthOmics User Guide.
description
instance-attribute
¶
description: NotRequired[WorkflowDescription]
A description for the workflow.
engine
instance-attribute
¶
engine: NotRequired[WorkflowEngine]
The workflow engine for the workflow. By default, Amazon Web Services HealthOmics detects the engine automatically from your workflow definition. Provide a value if you have workflow definition files from more than one engine in your zip file, or to use WDL lenient.
WDL lenient is designed to handle workflows migrated from Cromwell. It supports customer Cromwell directives and some non-conformant logic. For details, see Implicit type conversion in WDL lenient in the Amazon Web Services HealthOmics User Guide.
main
instance-attribute
¶
main: NotRequired[WorkflowMain]
The path of the main definition file for the workflow. This parameter is not required if the ZIP archive contains only one workflow definition file, or if the main definition file is named “main”. An example path is: workflow-definition/main-file.wdl.
name
instance-attribute
¶
name: NotRequired[WorkflowName]
Name (optional but highly recommended) for the workflow to locate relevant information in the CloudWatch logs and Amazon Web Services HealthOmics console.
parameter_template
instance-attribute
¶
parameter_template: NotRequired[WorkflowParameterTemplate]
A parameter template for the workflow. If this field is blank, Amazon Web Services HealthOmics will automatically parse the parameter template values from your workflow definition file. To override these service generated default values, provide a parameter template. To view an example of a parameter template, see Parameter template files in the Amazon Web Services HealthOmics User Guide.
parameter_template_path
instance-attribute
¶
parameter_template_path: NotRequired[ParameterTemplatePath]
The path to the workflow parameter template JSON file within the repository. This file defines the input parameters for runs that use this workflow. If not specified, the workflow will be created without a parameter template.
readme_markdown
instance-attribute
¶
readme_markdown: NotRequired[ReadmeMarkdown]
The markdown content for the workflow's README file. This provides documentation and usage information for users of the workflow.
readme_path
instance-attribute
¶
readme_path: NotRequired[ReadmePath]
The path to the workflow README markdown file within the repository. This file provides documentation and usage information for the workflow. If not specified, the README.md file from the root directory of the repository will be used.
readme_uri
instance-attribute
¶
readme_uri: NotRequired[S3UriForObject]
The S3 URI of the README file for the workflow. This file provides documentation and usage information for the workflow. Requirements include:
-
The S3 URI must begin with
s3://USER-OWNED-BUCKET/ -
The requester must have access to the S3 bucket and object.
-
The max README content length is 500 KiB.
request_id
instance-attribute
¶
request_id: WorkflowRequestId
An idempotency token to ensure that duplicate workflows are not created when Amazon Web Services HealthOmics submits retry requests.
storage_capacity
instance-attribute
¶
storage_capacity: NotRequired[int]
The default static storage capacity (in gibibytes) for runs that use this workflow or workflow version. The storageCapacity can be overwritten at run time. The storage capacity is not required for runs with a DYNAMIC storage type.
storage_type
instance-attribute
¶
storage_type: NotRequired[StorageType]
The default storage type for runs that use this workflow. The storageType can be overridden at run time. DYNAMIC storage dynamically scales the storage up or down, based on file system utilization. STATIC storage allocates a fixed amount of storage. For more information about dynamic and static storage types, see Run storage types in the Amazon Web Services HealthOmics User Guide.
tags
instance-attribute
¶
tags: NotRequired[TagMap]
Tags for the workflow. You can define up to 50 tags for the workflow. For more information, see Adding a tag in the Amazon Web Services HealthOmics User Guide.
workflow_bucket_owner_id
instance-attribute
¶
workflow_bucket_owner_id: NotRequired[WorkflowBucketOwnerId]
The Amazon Web Services account ID of the expected owner of the S3 bucket that contains the workflow definition. If not specified, the service skips the validation.